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The Human Journey Beyond Flesh and Thought

Illustration of fetus in utero
Source image: Stanford Children

 

From Cell to Soul 

It begins with something microscopic: a cell, a spark, a zygote. A meeting of two parts destined to become one. That’s the biological origin of every human being: small, unseen, yet miraculously alive. In the womb, our heart begins to beat before we ever think a thought. Our body forms before we are aware of it. We are nourished, protected, and carried. Life happens and it's full of mystery.

Cell
A cell is the basic structural, functional, and biological unit of all living organisms. In humans, cells come in many types, each with specialized functions. Every human starts as a single cell, the zygote which carries all the genetic information needed to develop into a complete organism.

The Zinc Spark
The zinc spark is a real biological phenomenon that occurs during fertilization. When a sperm successfully fertilizes an egg, the egg releases billions of zinc ions in a burst, producing a visible flash of light under a microscope. This spark is a sign that the egg is activated and the process of embryonic development has begun.

Zygote 
A zygote is the first cell formed when a sperm cell unites with an egg cell during fertilization. It contains a full set of 46 chromosomes, half from each parent. The zygote begins dividing through mitosis within 24–30 hours, eventually forming the embryo. 

Prenatal Development Summary

Prenatal development is typically divided into three main stages:

1. Germinal Stage (Weeks 1–2)

  • Begins with fertilization, forming the zygote.

  • The zygote travels down the fallopian tube, dividing and forming a blastocyst.

  • Ends with implantation in the uterine wall.

2. Embryonic Stage (Weeks 3–8)

  • Cells differentiate into three primary germ layers (ectoderm, mesoderm, endoderm).

  • Major organs and body systems begin forming: brain, spinal cord, heart, limbs.

  • The embryo is highly sensitive to environmental influences.

3. Fetal Stage (Week 9–Birth)

  • The developing baby is now called a fetus.

  • Rapid growth in size and refinement of body systems.

  • By the end of this stage, the fetus is fully formed and ready for birth.

 

But biology is only the shell. Beyond the formation of limbs and brain waves lies something even more profound consciousness. As we grow, we begin to feel. And when feeling deepens into awareness, we enter the realm of psychology. Emotions surface before language, instincts shape our first reactions, and memories start to store themselves within us like invisible blueprints.

Sometimes, we grow up in gentle light. Other times, in shadows and noise. Regardless of environment, the mind reacts: defending, adjusting, surviving. Our thoughts try to make sense of the storm, but not everything can be explained by logic. Psychology, for all its wisdom, cannot always reach the root of our pain, because the soul remembers what the mind forgets.

That’s where we called spirituality.

There comes a moment when we look beyond our biology and psychology and ask, Who am I really? Not just the person shaped by genes or trauma, but the one who quietly watches behind the eyes. That witnessing presence. That silent strength. Some call it the spirit. Some call it the soul. Others call it the breath of God within.

We don’t choose to be born. We don't control the place or the people we begin with. But what we do carry is something divine, the invitation to return to ourselves. Not the self that was hurt or judged or overlooked, but the original self, the one that came from Love and will return to Love.

Yes, hormones rage. Bodies ache. The brain rewires itself in joy and despair. But beyond all of that is something no science can fully explain: the will to keep going, the whisper of God in our loneliness, and the sacred truth that we belong, not to this world or its chaos, but to the One who gave us breath.

No matter how broken we feel, there is something unbreakable within.
We are not just bodies.
We are not just minds.
We are souls, experiencing biology, carrying psychology, and longing for spiritual home.

Remembering who we are underneath it all. 

Surah Ali-Imran (Family of Imran 3:59): 

إِنَّ مَثَلَ عِيسَىٰ عِندَ ٱللَّهِ كَمَثَلِ ءَادَمَ ۖ خَلَقَهُۥ مِن تُرَابٍۢ ثُمَّ قَالَ لَهُۥ كُن فَيَكُونُ ٥٩

Indeed, the example of Jesus in the sight of Allah is like that of Adam. He created him from dust, then said to him, “Be!” And he was! 

Surah Al-Mu'minun (The Believers 23:12-16): 

وَلَقَدْ خَلَقْنَا ٱلْإِنسَـٰنَ مِن سُلَـٰلَةٍۢ مِّن طِينٍۢ ١٢

And indeed, We created humankind from an extract of clay,  

ثُمَّ جَعَلْنَـٰهُ نُطْفَةًۭ فِى قَرَارٍۢ مَّكِينٍۢ ١٣

then placed each ˹human˺ as a sperm-drop in a secure place,  

ثُمَّ خَلَقْنَا ٱلنُّطْفَةَ عَلَقَةًۭ فَخَلَقْنَا ٱلْعَلَقَةَ مُضْغَةًۭ فَخَلَقْنَا ٱلْمُضْغَةَ عِظَـٰمًۭا فَكَسَوْنَا ٱلْعِظَـٰمَ لَحْمًۭا ثُمَّ أَنشَأْنَـٰهُ خَلْقًا ءَاخَرَ ۚ فَتَبَارَكَ ٱللَّهُ أَحْسَنُ ٱلْخَـٰلِقِينَ ١٤

then We developed the drop into a clinging clot, then developed the clot into a lump ˹of flesh˺, then developed the lump into bones, then clothed the bones with flesh, then We brought it into being as a new creation. So Blessed is Allah, the Best of Creators.  

ثُمَّ إِنَّكُم بَعْدَ ذَٰلِكَ لَمَيِّتُونَ ١٥

After that you will surely die,  

ثُمَّ إِنَّكُمْ يَوْمَ ٱلْقِيَـٰمَةِ تُبْعَثُونَ ١٦

then on the Day of Judgment you will be resurrected. 

Surah Az-Zumar (The Troops 39:6):

خَلَقَكُم مِّن نَّفْسٍۢ وَٰحِدَةٍۢ ثُمَّ جَعَلَ مِنْهَا زَوْجَهَا وَأَنزَلَ لَكُم مِّنَ ٱلْأَنْعَـٰمِ ثَمَـٰنِيَةَ أَزْوَٰجٍۢ ۚ يَخْلُقُكُمْ فِى بُطُونِ أُمَّهَـٰتِكُمْ خَلْقًۭا مِّنۢ بَعْدِ خَلْقٍۢ فِى ظُلُمَـٰتٍۢ ثَلَـٰثٍۢ ۚ ذَٰلِكُمُ ٱللَّهُ رَبُّكُمْ لَهُ ٱلْمُلْكُ ۖ لَآ إِلَـٰهَ إِلَّا هُوَ ۖ فَأَنَّىٰ تُصْرَفُونَ ٦

He created you ˹all˺ from a single soul, then from it He made its mate. And He produced for you four pairs of cattle. He creates you in the wombs of your mothers ˹in stages˺, one development after another, in three layers of darkness. That is Allah—your Lord! All authority belongs to Him. There is no god ˹worthy of worship˺ except Him. How can you then be turned away? 

Surah Ghafir (The Forgiver 40:67): 

هُوَ ٱلَّذِى خَلَقَكُم مِّن تُرَابٍۢ ثُمَّ مِن نُّطْفَةٍۢ ثُمَّ مِنْ عَلَقَةٍۢ ثُمَّ يُخْرِجُكُمْ طِفْلًۭا ثُمَّ لِتَبْلُغُوٓا۟ أَشُدَّكُمْ ثُمَّ لِتَكُونُوا۟ شُيُوخًۭا ۚ وَمِنكُم مَّن يُتَوَفَّىٰ مِن قَبْلُ ۖ وَلِتَبْلُغُوٓا۟ أَجَلًۭا مُّسَمًّۭى وَلَعَلَّكُمْ تَعْقِلُونَ ٦٧

He is the One Who created you from dust, then from a sperm-drop, then ˹developed you into˺ a clinging clot, then He brings you forth as infants, so that you may reach your prime, and become old—though some of you ˹may˺ die sooner—reaching an appointed time, so perhaps you may understand ˹Allah’s power˺. 

 


"If we end up dying, why do we live? 

That question is one of the oldest, deepest, and most human reflections ever asked. 

1. Biologically Life Is a Process, Not a Goal

From a purely biological standpoint:

  • We live because life begets life. Cells replicate, organisms survive and reproduce.

  • Evolution isn't about finding a "purpose", it’s about continuing a cycle. You're part of a vast genetic story stretching millions of years. But biology doesn't explain the meaning, it explains the mechanism.

2. Psychologically: We Create Meaning

Psychology teaches:

  • Humans need purpose to feel grounded.

  • Meaning can come from love, creation, connection, growth, and even pain.

  • Viktor Frankl, a Holocaust survivor and psychiatrist, said:

    He who has a why to live can bear almost any how.

So even if we die, what we do while we live gives shape to our time here. Every act of kindness, every story, every memory you create matters.

3. Spiritually: Life Is a Test and a Journey

In Islamic belief (and many spiritual traditions):

  • Life is a temporary station, not the destination.

  • The soul existed before the body and will continue after death.

  • Life is a test: of patience, faith, gratitude, compassion, and truth.

  • The Qur’an says:

    “Every soul shall taste death...” (3:185)
    And
    “We created death and life to test which of you is best in deed.” (67:2)

So you live to meet your Lord, to worship Allah, to fulfill a trust (amanah), and to journey back to your true home, eternity

Death is inevitable. But that doesn’t make life meaningless. It makes it precious. It means that every small moment counts. It means we’re not here to last forever. We’re here to become something eternal.